BioMedical Terminology Service Documentation

The BioMedical Terminology Service (BTS) is a comprehensive platform designed to provide unified access and other features related to biomedical terminologies, like ontologies, thesauri, and controlled vocabularies. It aims to facilitate the integration, retrieval, and research of biomedical terms for various applications in healthcare, research, and data analysis.

Contents:

• About
• Installation Guide
  • Contents
  • Available Images
  • Docker Compose
  • General Settings
  • Celery (Worker Only)
  • Document Database
  • Graph Database
  • Cache
  • Vector Database
  • External API Keys (Optional)
  • Embedding & Search Settings
  • CLI Output Settings
• Constructing Database
  • Setting up Databases
  • Building the Database
• Vocabularies and Annotations
  • Vocabulary Support
  • Vocabulary Inclusion Criteria
  • Annotations Support
• Usage
  • Auto-Completion Service
  • Search
  • Expansion
  • Mapping
  • Similarity
  • Trace
  • Data Management
  • Monitoring
• Similarity Methods
  • Relevance Method
  • Co-Annotation Vector Method
  • Weighed Relevance Method
• GraphQL
  • Endpoint
  • Schema availability
  • Schema structure
  • Cross-vocabulary annotations
  • Example query
• FHIR
  • Capability statement
  • Listing code systems
  • Looking up a code
  • Validating a code
• MCP API Reference
• Connection
• Supported Vocabularies
• Tools
  • auto_complete
  • search_vocabulary
  • expand_ontology
  • map_concepts
  • get_similar_concepts
  • translate_concepts_to_constraints
• Resources
• Use cases
• Connecting and using the MCP API